About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31026075_31027257_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31026075 - 31027257
Intron Length:
1183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
ACGTACTGAATA
Flanking Amino Acid:
LLKLMSTVDPKLNHVAAGLV
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
76
34.8
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
92.3
0.95
0.6
85.1
29.7
Minor 5ss
50.5
0.02
2.7
68.2
36.7
Minor BPS
52.1
0.06
1.6
59.57
40.4

Associated Gene:

Gene:
SRSF11
Ensembl Gene ID:
ENSAPLG00000010241
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037723
31014001 - 31032119
18119
ENSAPLT00000010697
31014001 - 31033189
19189