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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31027386_31027845_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31027386 - 31027845
Intron Length:
460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCAACTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
ATCTCTTTAACT
Flanking Amino Acid:
QSLISAAIEPDKKDEKRRHS
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
77.1
0.61
0.9
67.7
37.8
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
83.3
1.12
1
90.07
34.1

Associated Gene:

Gene:
SRSF11
Ensembl Gene ID:
ENSAPLG00000010241
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037723
31014001 - 31032119
18119
ENSAPLT00000010697
31014001 - 31033189
19189