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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31029793_31030451_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31029793 - 31030451
Intron Length:
659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TGTTCCTTACAG
Flanking Amino Acid:
STTRRSRSTSRERRRRRSRS
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
82.7
0.74
0.8
76.4
32.3
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
63
0.27
1.8
69.63
43.2

Associated Gene:

Gene:
SRSF11
Ensembl Gene ID:
ENSAPLG00000010241
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037723
31014001 - 31032119
18119
ENSAPLT00000010697
31014001 - 31033189
19189