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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31038671_31040196_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
31038671 - 31040196
Intron Length:
1526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAATAAC
5'SS Class:
major
3'SS Sequence:
TCTGAACTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TCTTTCTGAACT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
0.9
72.6
31.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
69.2
0.43
0.9
59.3
41.7
Minor 5ss
30.1
-2.3
2.7
32.9
36.2
Minor BPS
76.1
0.9
1.3
88.41
36.6

Associated Gene:

Gene:
ANKRD13C
Ensembl Gene ID:
ENSAPLG00000010438
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010890
31038508 - 31060340
21833