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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31040347_31041367_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31040347 - 31041367
Intron Length:
1021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TACCTCTGATTT
Flanking Amino Acid:
KLPPGFPVKLDIPVFPTITA
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.7
37.2
Major BPS
79
0.72
1
69
38.9
Major PPT
78.6
0.64
0.8
70.6
36.2
Minor 5ss
34.3
-1.8
3.4
47
48.3
Minor BPS
47.7
-0
1.7
63.01
41.4

Associated Gene:

Gene:
ANKRD13C
Ensembl Gene ID:
ENSAPLG00000010438
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010890
31038508 - 31060340
21833