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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31042278_31043728_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31042278 - 31043728
Intron Length:
1451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAC
U12 Branch Point Sequence:
TTTCTCCCCATT
Flanking Amino Acid:
WEEYISAENGKAPHLGRELV
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
26.3
Major BPS
58.2
0.21
1
49.8
34.7
Major PPT
76
0.59
0.8
69.3
29.6
Minor 5ss
36.1
-1.6
3.3
49.4
41.3
Minor BPS
44.3
-0.3
2.2
70
41.2

Associated Gene:

Gene:
ANKRD13C
Ensembl Gene ID:
ENSAPLG00000010438
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010890
31038508 - 31060340
21833