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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31045754_31046499_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31045754 - 31046499
Intron Length:
746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTAAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TATTTGGAAATT
Flanking Amino Acid:
QKVYQRIHHEESEMETEEEV
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
77.5
32.9
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
82.6
0.73
0.7
74.8
35.5
Minor 5ss
29.2
-2.4
2.9
35.3
41.5
Minor BPS
42
-0.5
2.7
67.77
43.9

Associated Gene:

Gene:
ANKRD13C
Ensembl Gene ID:
ENSAPLG00000010438
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010890
31038508 - 31060340
21833