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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31046645_31048304_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31046645 - 31048304
Intron Length:
1660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTCTTTTAAAA
Flanking Amino Acid:
CKIHKQGINIRLDTTLIDFT
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.1
1.13
0.6
93.5
20.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.3
0.7
0.9
75.9
37.9
Minor 5ss
38.4
-1.3
2.8
52.3
44.3
Minor BPS
62.4
0.39
1.4
69.31
37

Associated Gene:

Gene:
ANKRD13C
Ensembl Gene ID:
ENSAPLG00000010438
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010890
31038508 - 31060340
21833