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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31049499_31050903_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31049499 - 31050903
Intron Length:
1405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTTTGTTAATG
Flanking Amino Acid:
RPRLLKALKELGDFYLELHW
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
84.4
0.85
1
84
34.5
Major PPT
82.8
0.74
0.7
80.6
24.6
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
58.2
0.12
2.1
67.31
41

Associated Gene:

Gene:
ANKRD13C
Ensembl Gene ID:
ENSAPLG00000010438
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010890
31038508 - 31060340
21833