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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31050990_31051929_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31050990 - 31051929
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGAGCC
5'SS Class:
major
3'SS Sequence:
AATTTCTGTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TTATCGTTAATT
Flanking Amino Acid:
EAISYGDRQMITALLRKLKQ
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
61
39.2
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
76.6
0.6
1
74.1
40.6
Minor 5ss
33
-1.9
3.3
39.7
39.8
Minor BPS
70.9
0.73
2
88.75
36.3

Associated Gene:

Gene:
ANKRD13C
Ensembl Gene ID:
ENSAPLG00000010438
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010890
31038508 - 31060340
21833