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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31054859_31059973_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31054859 - 31059973
Intron Length:
5115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CACTCTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTTTTCCACT
Flanking Amino Acid:
TQGIGQKDSHGNTPLHLAVM
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.2
39.6
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
72.8
0.51
0.8
70.1
34.7
Minor 5ss
28
-2.5
3
33.4
41.6
Minor BPS
58.1
0.34
2
83.3
38.2

Associated Gene:

Gene:
ANKRD13C
Ensembl Gene ID:
ENSAPLG00000010438
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010890
31038508 - 31060340
21833