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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31060692_31065546_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31060692 - 31065546
Intron Length:
4855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGATG
5'SS Class:
major
3'SS Sequence:
GCTTTCACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
TCTCTCTAAAGT
Flanking Amino Acid:
PGRGAEGAEGGYEYSRSGNP
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
69.5
42.7
Major BPS
73
0.57
1
73.6
28.6
Major PPT
69
0.43
1
63.3
37
Minor 5ss
30
-2.3
3.2
31.4
42.6
Minor BPS
51.8
0.13
2
72.32
44.9

Associated Gene:

Gene:
CTH
Ensembl Gene ID:
ENSAPLG00000010832
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031972
31059918 - 31080750
20833