About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31062813_31065546_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31062813 - 31065546
Intron Length:
2734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
TCTCTCTAAAGT
Flanking Amino Acid:
FKQRAPGQHAGYEYSRSGNP
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.2
39.6
Major BPS
73
0.57
1
73.6
28.6
Major PPT
69
0.43
1
63.3
37
Minor 5ss
28
-2.5
3
33.4
41.6
Minor BPS
51.8
0.13
2
72.32
44.9

Associated Gene:

Gene:
CTH
Ensembl Gene ID:
ENSAPLG00000010832
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011296
31062216 - 31080750
18535