Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31065629_31066174_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31065629 - 31066174

Intron Length:

546

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTAAGTAGT

5'SS Class:

major

3'SS Sequence:

TCTCTGGTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

CTGTCTGCCACT

Flanking Amino Acid:

AVAALDGAKYCLAYASGLAA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.61

1.1

75.1

40.8

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

75.2

0.57

0.9

72.8

37.5

Minor 5ss

40.4

-1.1

2.9

61.4

42.9

Minor BPS

42.2

-0.5

2.5

63.1

47.5

Associated Gene:

Gene:

CTH

Ensembl Gene ID:

ENSAPLG00000010832

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031972

31059918 - 31080750

20833

ENSAPLT00000011296

31062216 - 31080750

18535