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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3110853_3128321_F

Intron Information:

Intron Rank:
133329
Intron Class:
major
Intron Phase:
Intron Coordinates:
3110853 - 3128321
Intron Length:
17469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
GTTTTTTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
84.9
0.79
0.8
80.2
32
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
49.8
-0
1.9
67.57
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021697
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039664
3110703 - 3132226
21524