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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31145650_31147340_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31145650 - 31147340
Intron Length:
1691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
TTCCTCTCTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTTTCTTATTT
Flanking Amino Acid:
LFSANDWQCKTCGNVNWARR
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.5
0.27
1.4
56.6
42.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.1
0.54
1
75.3
27.2
Minor 5ss
29.9
-2.3
3.7
39.2
40.4
Minor BPS
69.9
0.7
1.5
84.13
37

Associated Gene:

Gene:
ZRANB2
Ensembl Gene ID:
ENSAPLG00000011345
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011819
31137827 - 31147668
9842
ENSAPLT00000011824
31137827 - 31150728
12902