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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3128518_3130718_F

Intron Information:

Intron Rank:
133330
Intron Class:
major
Intron Phase:
Intron Coordinates:
3128518 - 3130718
Intron Length:
2201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AATTTCTCAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
89.4
23.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
84.3
0.77
0.7
79.8
32.3
Minor 5ss
36.8
-1.5
2.9
50.6
45.9
Minor BPS
59.2
0.29
1.6
68.7
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021697
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039664
3110703 - 3132226
21524