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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31295380_31310237_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31295380 - 31310237
Intron Length:
14858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCGCA
5'SS Class:
strong_major
3'SS Sequence:
TATTTCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CCTCCTGTAATT
Flanking Amino Acid:
SISWRHISPSAKPFESGQYL
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.7
37.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.1
0.79
0.8
82.5
33.5
Minor 5ss
36.8
-1.5
3.3
44.7
44.3
Minor BPS
50
0.08
2
68.31
43.6

Associated Gene:

Gene:
NEGR1
Ensembl Gene ID:
ENSAPLG00000011651
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012173
31213484 - 31353102
139619