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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3137187_3137789_F

Intron Information:

Intron Rank:
142324
Intron Class:
major
Intron Phase:
Intron Coordinates:
3137187 - 3137789
Intron Length:
603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
GGTTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATTATATCAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77
34.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80.6
0.69
0.9
76.9
42.1
Minor 5ss
42
-0.9
2.8
53.8
43.7
Minor BPS
49
-0
1.8
63.9
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026646
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030335
3134898 - 3137871
2974