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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31483076_31483833_F

Intron Information:

Intron Rank:
148806
Intron Class:
major
Intron Phase:
Intron Coordinates:
31483076 - 31483833
Intron Length:
758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TGCTCCTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
81.3
0.7
0.8
75.8
32.9
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
71.9
0.77
1.7
84.57
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030100
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048048
31482181 - 31484005
1825