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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31587296_31589347_F

Intron Information:

Intron Rank:
140317
Intron Class:
major
Intron Phase:
Intron Coordinates:
31587296 - 31589347
Intron Length:
2052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCAAAT
U12 Branch Point Sequence:
TTTTTCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
66.3
39.5
Major BPS
59.5
0.24
1.2
67.3
37.8
Major PPT
91.6
0.94
0.6
87.6
22.6
Minor 5ss
33
-1.9
3.3
45.7
43.5
Minor BPS
75.4
0.79
1.7
86.69
32.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025494
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047769
31586999 - 31590339
3341