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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31727751_31738452_R

Intron Information:

Intron Rank:
134887
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
31727751 - 31738452
Intron Length:
10702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGGGTACA
5'SS Class:
major
3'SS Sequence:
CTGCAATAGACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TGTTCACTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
68
38.8
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
55.8
0.13
1.1
50.3
42
Minor 5ss
29.7
-2.3
2.8
34.5
41.3
Minor BPS
50.8
0.1
2.2
79.24
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019913
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023280
31727120 - 31738740
11621