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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31794354_31797644_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31794354 - 31797644
Intron Length:
3291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TCATCTGTAAAA
Flanking Amino Acid:
KELAELKHVFSSDEAFCKVN
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
93.1
0.97
0.6
92.3
18
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
50.8
0.02
2.1
65
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023419
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019940
31793600 - 31803494
9895
ENSAPLT00000039856
31793600 - 31801030
7431
ENSAPLT00000020836
31791945 - 31802266
10322