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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31864394_31869670_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31864394 - 31869670
Intron Length:
5277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTTACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
AATGTTTCAATT
Flanking Amino Acid:
EEFPQSDKGSAPGGAFLAEG
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
70
0.45
1
63.4
42.9
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
51.3
0.12
1.6
66.92
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012188
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012702
31860522 - 31881456
20935