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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31870175_31871522_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31870175 - 31871522
Intron Length:
1348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TGTTTTCTATTT
Flanking Amino Acid:
SDSDLEDNKQDRRSAHSLSS
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
1
92
25
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
84.8
0.78
0.7
78
35.4
Minor 5ss
38
-1.4
2.8
51.9
44.6
Minor BPS
49.5
0.05
1.9
72.55
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012188
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012702
31860522 - 31881456
20935