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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31871742_31873884_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31871742 - 31873884
Intron Length:
2143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGGTAT
5'SS Class:
major
3'SS Sequence:
TCTTTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATTCTTTTATTT
Flanking Amino Acid:
EDSQEDTGKNDYDEDFEAEE
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.1
68.5
38.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.3
0.82
0.7
85.7
27.2
Minor 5ss
37.5
-1.4
3.6
51.8
47.2
Minor BPS
58.4
0.34
1.5
74.96
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012188
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012702
31860522 - 31881456
20935