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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31911664_31912093_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
31911664 - 31912093
Intron Length:
430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGAGAAA
5'SS Class:
weak_major
3'SS Sequence:
ATGTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTAATGTAAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.2
60.3
40
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
80.8
0.69
0.9
77.6
40.7
Minor 5ss
25.9
-2.8
3.1
30.7
42.9
Minor BPS
46.3
-0.2
2.3
68.64
42.8

Associated Gene:

Gene:
TYW3
Ensembl Gene ID:
ENSAPLG00000019658
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034013
31911455 - 31915606
4152