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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31912193_31913051_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31912193 - 31913051
Intron Length:
859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAATTA
5'SS Class:
major
3'SS Sequence:
ATTTGTGCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
GTGTATATGACA
Flanking Amino Acid:
CRELQDAQLLHSVAIDSGFK
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
72.9
32.2
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
76.8
0.6
1
70.1
40.8
Minor 5ss
41
-1
3.2
52.8
46.3
Minor BPS
48.1
-0.1
1.8
60.95
38.9

Associated Gene:

Gene:
TYW3
Ensembl Gene ID:
ENSAPLG00000019658
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034013
31911455 - 31915606
4152