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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31913124_31913417_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31913124 - 31913417
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAAAA
U12 Branch Point Sequence:
TTCTAGAGAAAT
Flanking Amino Acid:
TVGRGGKIMMAVRSTHCLEV
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.9
36.3
Major BPS
47.9
-0.1
0.9
51.7
28.4
Major PPT
76.3
0.59
0.9
73.5
41.9
Minor 5ss
35
-1.7
3.2
47
42.5
Minor BPS
40.1
-0.6
2.4
64.35
45.1

Associated Gene:

Gene:
TYW3
Ensembl Gene ID:
ENSAPLG00000019658
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034013
31911455 - 31915606
4152