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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31913552_31914383_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31913552 - 31914383
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTAG
5'SS Class:
major
3'SS Sequence:
CTTGTCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
AAATAATTACAT
Flanking Amino Acid:
KMEENTKRIDRFYKCLQLAL
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
68.7
38.4
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
81
0.7
0.8
73.4
37.1
Minor 5ss
42
-0.9
2.5
49.5
46.8
Minor BPS
43.9
-0.3
2
60.69
41.7

Associated Gene:

Gene:
TYW3
Ensembl Gene ID:
ENSAPLG00000019658
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034013
31911455 - 31915606
4152