Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_32003923_32005031_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32003923 - 32005031

Intron Length:

1109

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGATTGTG

5'SS Class:

strong_major

3'SS Sequence:

TCCCCCTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTGAT

U12 Branch Point Sequence:

AATTGATCAACA

Flanking Amino Acid:

RTGLSRRVIQVWFQNCRARH

Intron Amino Acid Position:

207

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

0.9

74.1

36.4

Major BPS

79.8

0.74

0.9

69.4

37.7

Major PPT

82.5

0.73

0.7

79.8

25.6

Minor 5ss

30.9

-2.2

3.2

40.2

45.9

Minor BPS

-0.1

2.2

64.97

40.8

Associated Gene:

Gene:

LHX8

Ensembl Gene ID:

ENSAPLG00000012727

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022093

31997571 - 32006141

8571

ENSAPLT00000013253

31997054 - 32006141

9088