About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_32035311_32036601_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32035311 - 32036601
Intron Length:
1291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TATTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GATTATTTAAAA
Flanking Amino Acid:
KFINRNAYIMIAIYGKNFCT
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
79.7
33.4
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
86.3
0.82
0.8
80.9
36.4
Minor 5ss
44.9
-0.6
3.2
63.2
43.8
Minor BPS
59.8
0.31
1.6
68.02
37.5

Associated Gene:

Gene:
SLC44A5
Ensembl Gene ID:
ENSAPLG00000013016
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013620
32028324 - 32078887
50564