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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_320619_330719_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
320619 - 330719
Intron Length:
10101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
ATCACTTTCACA
Flanking Amino Acid:
PQKMDLTMQSALDCKQKKSR
Intron Amino Acid Position:
1203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
81.2
0.7
0.7
80.6
24.7
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
55.2
0.16
1.8
65.99
40.8

Associated Gene:

Gene:
ZNF644
Ensembl Gene ID:
ENSAPLG00000013510
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014075
319852 - 385480
65629