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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_320619_331499_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
320619 - 331499
Intron Length:
10881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
ATCACTTTCACA
Flanking Amino Acid:
TGTPVKRVRKALDCKQKKSR
Intron Amino Acid Position:
859

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
81.2
0.7
0.7
80.6
24.7
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
55.2
0.16
1.8
65.99
40.8

Associated Gene:

Gene:
ZNF644
Ensembl Gene ID:
ENSAPLG00000013510
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042662
319852 - 335290
15439