Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_32117729_32118351_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32117729 - 32118351

Intron Length:

623

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGGGTGTC

5'SS Class:

major

3'SS Sequence:

GTACTTTCTAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTGAC

U12 Branch Point Sequence:

TACTTTCTAAAG

Flanking Amino Acid:

MGTPQKDVVIK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

68.4

36.9

Major BPS

64.8

0.37

0.9

55.1

32.8

Major PPT

67.5

0.39

1.1

67.3

38.1

Minor 5ss

30.6

-2.2

3.5

39.3

41.1

Minor BPS

47.9

-0.2

1.8

53.84

41.2

Associated Gene:

Gene:

RABGGTB

Ensembl Gene ID:

ENSAPLG00000013952

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046929

32117667 - 32128895

11229