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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_32118460_32119488_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
32118460 - 32119488
Intron Length:
1029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAGGTACC
5'SS Class:
major
3'SS Sequence:
AAGCACTTCTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TGATTAAGAACT
Flanking Amino Acid:
ASYGTKKDDYEYCMSEYLRM
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
72.1
35.8
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
59.4
0.21
0.9
55.2
40.1
Minor 5ss
38
-1.3
3
50.9
38.8
Minor BPS
46.9
-0.1
1.9
69.08
40.7

Associated Gene:

Gene:
RABGGTB
Ensembl Gene ID:
ENSAPLG00000013952
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014551
32117667 - 32126580
8914
ENSAPLT00000046929
32117667 - 32128895
11229
ENSAPLT00000035332
32117667 - 32128333
10667