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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_32119687_32121360_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32119687 - 32121360
Intron Length:
1674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGTA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTCTTTGATT
Flanking Amino Acid:
HLLYTLSAVQILILYDSLHV
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.6
30.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
85.1
0.79
0.8
76.7
37.4
Minor 5ss
33.4
-1.9
3.6
46.9
48.4
Minor BPS
76.7
0.92
1.1
86.38
34

Associated Gene:

Gene:
RABGGTB
Ensembl Gene ID:
ENSAPLG00000013952
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046929
32117667 - 32128895
11229
ENSAPLT00000035332
32117667 - 32128333
10667
ENSAPLT00000014551
32117667 - 32126580
8914