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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_32121467_32122792_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32121467 - 32122792
Intron Length:
1326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAATTTTT
5'SS Class:
major
3'SS Sequence:
TTCTGTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TCATTCTGAACT
Flanking Amino Acid:
EDGSFAGDKWGEIDTRFSFC
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
80.7
34.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
79.7
0.67
0.8
78
35.1
Minor 5ss
45.8
-0.4
2.8
59.1
45.4
Minor BPS
70.3
0.72
1.4
81.41
40

Associated Gene:

Gene:
RABGGTB
Ensembl Gene ID:
ENSAPLG00000013952
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035332
32117667 - 32128333
10667
ENSAPLT00000014551
32117667 - 32126580
8914
ENSAPLT00000046929
32117667 - 32128895
11229