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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_32123075_32123427_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32123075 - 32123427
Intron Length:
353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTAATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTCTGTAATT
Flanking Amino Acid:
RPGSESHAGQIYCCTGFLAI
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.2
1.16
0.6
97
9.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.1
0.54
0.9
71.2
38.6
Minor 5ss
46.1
-0.4
2.8
66.9
44.4
Minor BPS
59.6
0.38
2
77.6
39.8

Associated Gene:

Gene:
RABGGTB
Ensembl Gene ID:
ENSAPLG00000013952
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035332
32117667 - 32128333
10667
ENSAPLT00000014551
32117667 - 32126580
8914
ENSAPLT00000046929
32117667 - 32128895
11229