About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_32123554_32124210_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32123554 - 32124210
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAGGT
5'SS Class:
major
3'SS Sequence:
CTCTGTTTGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
AATTGAATAATA
Flanking Amino Acid:
SGGLNGRPEKLPDVCYSWWV
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
64.4
39.9
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
76
0.59
1
75.9
38
Minor 5ss
38.3
-1.3
3.4
56.7
47.4
Minor BPS
45.8
-0.3
2.2
61.4
38.3

Associated Gene:

Gene:
RABGGTB
Ensembl Gene ID:
ENSAPLG00000013952
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046929
32117667 - 32128895
11229
ENSAPLT00000035332
32117667 - 32128333
10667
ENSAPLT00000014551
32117667 - 32126580
8914