Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_32124361_32128177_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32124361 - 32128177

Intron Length:

3817

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAATAAT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCTCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGGAA

U12 Branch Point Sequence:

TCTTTTGGAAAT

Flanking Amino Acid:

GGFADRPGDMVDPFHTLFGI

Intron Amino Acid Position:

306

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

82.1

30.4

Major BPS

62.2

0.3

1.4

63.4

44.3

Major PPT

91.1

0.92

0.6

84.9

Minor 5ss

36.9

-1.5

2.9

47.6

42.5

Minor BPS

46.5

-0.1

2.1

69.04

42.2

Associated Gene:

Gene:

RABGGTB

Ensembl Gene ID:

ENSAPLG00000013952

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035332

32117667 - 32128333

10667

ENSAPLT00000046929

32117667 - 32128895

11229