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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_32134070_32137253_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32134070 - 32137253
Intron Length:
3184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACTG
5'SS Class:
strong_major
3'SS Sequence:
AACTGTTTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TATAACTGAATA
Flanking Amino Acid:
RSRTPHMGYSVTSSSAVSAH
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
76
0.59
0.9
68.6
41.3
Minor 5ss
34.9
-1.7
3.3
47.4
48
Minor BPS
55.8
0.18
1.7
67.88
37.8

Associated Gene:

Gene:
MSH4
Ensembl Gene ID:
ENSAPLG00000014286
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014895
32133904 - 32160686
26783