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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_32142748_32143199_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32142748 - 32143199
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTAGTT
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
AGTTTCTGATCT
Flanking Amino Acid:
DEELFFGLQAVISKFLDTEQ
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
71.8
38.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
35
-1.7
3.8
55.8
48.4
Minor BPS
57.7
0.32
1.7
75.97
40.3

Associated Gene:

Gene:
MSH4
Ensembl Gene ID:
ENSAPLG00000014286
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014895
32133904 - 32160686
26783