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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_32143268_32148105_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
32143268 - 32148105
Intron Length:
4838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATGTTTC
5'SS Class:
weak_major
3'SS Sequence:
AAATATTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
AAATATTTAACA
Flanking Amino Acid:
VLVQIPKQDTVKTAESKITN
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
69
36.7
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
65.3
0.35
1.1
59.2
44.9
Minor 5ss
60.7
0.36
2.2
75.3
34.1
Minor BPS
64.8
0.46
1.4
69.23
36.2

Associated Gene:

Gene:
MSH4
Ensembl Gene ID:
ENSAPLG00000014286
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014895
32133904 - 32160686
26783