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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_32148181_32148497_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32148181 - 32148497
Intron Length:
317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TCATATTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
AAAGAATTAACT
Flanking Amino Acid:
HTLELVEPLKAALRSCNTPL
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
75.2
35.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
73.9
0.54
1
68.3
41.8
Minor 5ss
48.2
-0.2
2.8
66.3
38.7
Minor BPS
49.5
0.04
1.9
67.29
42.4

Associated Gene:

Gene:
MSH4
Ensembl Gene ID:
ENSAPLG00000014286
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014895
32133904 - 32160686
26783