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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_32148563_32149033_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32148563 - 32149033
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTATGA
5'SS Class:
major
3'SS Sequence:
ACTAATATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TAATAAGTAACA
Flanking Amino Acid:
KAYYSSLEDRRFGIILEKIT
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
63.2
37.6
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
70.8
0.47
1
62.9
42
Minor 5ss
43.5
-0.7
2.8
57
47.1
Minor BPS
46.5
-0.2
2.3
64.15
41.3

Associated Gene:

Gene:
MSH4
Ensembl Gene ID:
ENSAPLG00000014286
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014895
32133904 - 32160686
26783