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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_32149204_32150612_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32149204 - 32150612
Intron Length:
1409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCCA
5'SS Class:
major
3'SS Sequence:
TTGTGATACGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
AAATCTTTATTT
Flanking Amino Acid:
TYTEIVDDIAGMITQLAEKY
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
66.1
39.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
64.2
0.32
1
59.4
41.1
Minor 5ss
40.7
-1
2.7
51.5
44.8
Minor BPS
60.9
0.42
1.5
72.35
38.8

Associated Gene:

Gene:
MSH4
Ensembl Gene ID:
ENSAPLG00000014286
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014895
32133904 - 32160686
26783