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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_32151290_32152083_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32151290 - 32152083
Intron Length:
794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGACCA
5'SS Class:
major
3'SS Sequence:
TGTCTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
AGTGTCTTATTT
Flanking Amino Acid:
SLREIYHMTYLIVCKLLNEI
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
60
38.6
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
80
0.67
0.8
78.3
34.8
Minor 5ss
34.8
-1.7
3.1
46.8
42.3
Minor BPS
54.8
0.23
1.7
70.3
41.2

Associated Gene:

Gene:
MSH4
Ensembl Gene ID:
ENSAPLG00000014286
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014895
32133904 - 32160686
26783