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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_32156659_32157190_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32156659 - 32157190
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTAAAC
5'SS Class:
major
3'SS Sequence:
AATATTTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ACAAATTTAATA
Flanking Amino Acid:
ASTFMKEMKEITYIIQNAND
Intron Amino Acid Position:
656

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
69.7
34.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
70.7
0.47
0.9
62.6
43.2
Minor 5ss
39.9
-1.1
2.8
51.9
44.9
Minor BPS
50.8
0.02
1.5
56.18
36.9

Associated Gene:

Gene:
MSH4
Ensembl Gene ID:
ENSAPLG00000014286
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014895
32133904 - 32160686
26783