Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_32157320_32158801_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32157320 - 32158801

Intron Length:

1482

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATTCTG

5'SS Class:

strong_major

3'SS Sequence:

CCTTCTTATTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

CCCTTCTTATTT

Flanking Amino Acid:

AACEYLLNLKAFTLFATHFL

Intron Amino Acid Position:

699

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

74.6

41.7

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

77.9

0.63

0.8

77.2

30.4

Minor 5ss

37.9

-1.4

50.1

46.1

Minor BPS

55.7

0.26

1.6

66.23

45.5

Associated Gene:

Gene:

MSH4

Ensembl Gene ID:

ENSAPLG00000014286

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014895

32133904 - 32160686

26783